genewise output
Score 250.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000642_2.0    8 LLSAFPALLGAS--SLFVEKESSGSRICKPAPQWEIDGKTPMKELLGNV 
                     L +A+P  L AS   L+VE ++  S+ICKPAP WEI GK PMKELLGNV 
                     LYAALPGALCASQTTLLVEGDNDASKICKPAPHWEIRGKAPMKELLGNV 
OMLM01003153.1-20511 ctggccggctgtcaaccggggaggtaatacgcctgaagagcaagccgag 
                     tacctcgctgccacctttagaaaccatgacccagatggacctaattgat 
                     ctgagatggcgcacaggggacttccgccatcacggcaagacgggggata 


SPP00000642_2.0   55 VVVALLKASXHFCLTQAA                          LGDLR 
                      VVALLKASX FCL QAA                          +  LR 
                     AVVALLKASXQFCLVQAA           R:N[aac]       IKGLR 
OMLM01003153.1-20364 ggggccagatcttcgcggAAGTAAAGA  Intron 1   CAGCaagcc 
                     cttcttacggatgttacc  <2-----[20308:19589]-2> tagtg 
                     ggggaggtcagctctgca                          tacgt 


SPP00000642_2.0   79 DKLANGGLTNISFMVVNEQDSQSRAMYWELKRRTAQDIPVYQQSPLQND 
                     D+L    LT +SFM+VNE++  SRAMYWELKRR   ++PVYQQ+ LQ+D 
                     DRLNRSNLTEVSFMIVNEREPHSRAMYWELKRRAPPNVPVYQQAALQSD 
OMLM01003153.1-19572 gacacaacaggttaagagcgcctagattgcaaagccagcgtccggccag 
                     agtaggatcatcttttaagacacgctagataggcccatctaaacctaga 
                     cagccccggggtcgaacgagttcaagcggggaggcctttgcggtctatt 


SPP00000642_2.0  128 VWEILEGDKDDFLVYD                          CGYLTFH 
                     VWEIL+GDKDDFLVYD                          CG LTFH 
                     VWEILDGDKDDFLVYD           R:R[agg]       CGLLTFH 
OMLM01003153.1-19425 gtgacgggaggtcgtgAGGTAAGGC  Intron 2   TAGGtgccatc 
                     tgattagaaaatttaa  <2-----[19375:19000]-2> ggttcta 
                     gggtgttcatccgctt                          cttccct 


SPP00000642_2.0  152 IVLPFSFLHYPYIEAAIRATYHKNMCNCSLNANFSISESSDSTKNEPAG 
                     IVLP+SFLHYPY+EAAIRATYHKN+CNCS++ +   +++      +  G 
                     IVLPYSFLHYPYVEAAIRATYHKNICNCSVSNHTKCTQT-----HKQKG 
OMLM01003153.1-18977 agtctatcctctggggaagatcaaatattgaacaataca     cacag 
                     tttcagttaacatacctgccaaaatgagctgaacagcac     aaaag 
                     tgaacttgttatagtacatttcatccccagttcaacaaa     caagc 


SPP00000642_2.0  201 ENNQRPNS                          EPVTAAHHHHHQQH- 
                     +  Q                                 +  HHHHHQ H  
                     KRGQVVQK           T:S[agc]       INHSYNHHHHHQHHT 
OMLM01003153.1-18845 aagcggcaAGGTAACAC  Intron 3   CAGCaacatacccccccca 
                     aggattaa  <2-----[18819:18072]-2> taagaaaaaaaaaac 
                     agaagtaa                          cctttctttccgttc 


SPP00000642_2.0  224 EPHHHHNPYPNNHKKSGDSDVTGKPKEPTHHSHQEHVHNH          
                      P +   P    H+ +  +     P    HH H  + H+H          
                     SPRNQSQP----HQDTSQNKTQNNPPTTHHHQHPHNQHHH          
OMLM01003153.1-18025 acaactcc    ccgaacaaacaaccaacccccccacccc          
                     gcgaacac    aaacgaaacaaaccccaaaaacaaaaaa          
                     tcgtgcgt    tgtatgtatattttctttcaccttgttc          


//
Making a N in phase 2 intron
Making a R in phase 2 intron
Making a S in phase 2 intron
>OMLM01003153.1:subseq(0,43959).pep
LYAALPGALCASQTTLLVEGDNDASKICKPAPHWEIRGKAPMKELLGNVAVVALLKASXQ
FCLVQAANIKGLRDRLNRSNLTEVSFMIVNEREPHSRAMYWELKRRAPPNVPVYQQAALQ
SDVWEILDGDKDDFLVYDRCGLLTFHIVLPYSFLHYPYVEAAIRATYHKNICNCSVSNHT
KCTQTHKQKGKRGQVVQKSINHSYNHHHHHQHHTSPRNQSQPHQDTSQNKTQNNPPTTHH
HQHPHNQHHH
//
>OMLM01003153.1:subseq(0,43959).[20511:17916].sp
CTCTATGCGGCACTGCCAGGTGCGCTGTGCGCGTCCCAAACCACACTGCTGGTGGAGGGA
GACAATGATGCCTCCAAGATCTGCAAACCTGCCCCACACTGGGAGATCAGAGGAAAGGCA
CCCATGAAGGAGCTGCTGGGAAATGTAGCGGTGGTGGCGCTACTGAAGGCTAGCTGACAG
TTCTGTCTCGTTCAGGCCGCAAACATTAAAGGCCTGCGTGACAGACTGAACCGCAGCAAC
CTGACGGAGGTGTCTTTCATGATAGTAAACGAGCGAGAGCCTCATTCCAGAGCAATGTAC
TGGGAGCTGAAGAGAAGGGCGCCCCCCAATGTTCCTGTGTACCAGCAGGCTGCCCTTCAA
AGTGATGTGTGGGAGATTCTGGATGGTGACAAAGATGACTTCCTGGTCTATGATAGGTGC
GGTCTTCTCACCTTCCATATTGTGTTACCATACAGTTTTCTGCATTATCCATATGTAGAG
GCTGCAATCAGAGCTACTTATCACAAAAATATCTGCAACTGCTCAGTGAGTAATCACACA
AAATGCACACAAACACACAAACAAAAGGGCAAAAGGGGACAAGTGGTTCAAAAAAGCATC
AACCATAGTTATAACCATCATCATCACCACCAGCATCATACCAGTCCCAGGAATCAGTCC
CAGCCTCATCAGGATACAAGTCAGAATAAAACTCAAAATAATCCTCCTACCACTCATCAT
CACCAACACCCCCATAATCAGCATCATCAC
//
OMLM01003153.1:subseq(0,43959)	GeneWise	match	20511	17918	258.67	-	.	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	cds	20511	20309	0.00	-	0	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	intron	20308	19589	0.00	-	.	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	cds	19588	19376	0.00	-	1	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	intron	19375	19000	0.00	-	.	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	cds	18999	18820	0.00	-	1	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	intron	18819	18072	0.00	-	.	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
OMLM01003153.1:subseq(0,43959)	GeneWise	cds	18071	17918	0.00	-	1	OMLM01003153.1:subseq(0,43959)-genewise-prediction-1
//